Because the original topic hasn't been updated in three years, I decided to re-make the whole thread, add some new links and polish or throw out the old ones. As an homage to the original thread:

Tails_155 wrote:This was an Idea for how to make a site referencing various educational links on topics, I may or may not make a site this summer, granted time. Any other recommended links will be added

I have a plot so far:

Philosophy - General
EbonMusings

............... - Theology
Jesus Never Existed
Daylight Atheism
Richard Dawkins' Official Site
The Atheist Nexus
Why Won't God Heal Amputees?
BibleGod aka Skeptics annotated Bible
Evil Bible
The Vatican's Billions
The God Delusion, Bible, Qu'Ran, Bagavad Gita, etc.

Science - Combined
Made Easy series
The Discover Magazine Blogs
Scale of the Universe
Richard Harter's Website (RIP)
ScienceFriday
Neuroskeptic Blog
Ideonexus
SenseAboutScience

...........- Open Access Journals
A list of bad Journals
PLoS

...........- Earth Science - General

.................................- Geography
Gapminder
Worldmeter
Worldmapper

.................................- Biology
The Eyes of Nye: Race - 1, 2, 3
Darwin 2009
Panda's Thumb - news on evolution topics
LocoLobo - AronRa's "Homepage" on YouTube
Sean Carroll's column "Remarkable Creatures"
The Fossil Song
Insect Photography
Wikimedia - Species
Humanorigins - From the Smithsonian Institute
Genome.gov - Technical terms in biology explained - Biological Dictionary
DevonianTimes <- A page about Tiktaalik
Tiktaalik <- Guess what...?
WTF Evolution? Ever wanted really dumb "design"? Here's a whole page of it.
EvolutionaryModel - Need Info about ERV's, Vestigialities, etc.? Here you go!

...........- Astronomy
International Year of Astronomy 2009
Bad Astronomy
NASA - Astronomy Picture of the Day

...........- Physics - General
Khan Academy's Physics Videos
Hyperphysics - Explaining everything about physics you'll need in your daily life... and more!

........................- Mechanics

........................- Waves

........................- Electricity

...........- Chemistry
A Visual Representation of The Periodic Table of the Elements
Tom Lehrer's "The Elements" - Animated Version

Business - Economics
Khan Academy's Banking and Money Videos
Khan Academy's Finance Videos
Shane Killian's Economic Basics

.............- Management

Social Studies - History
Identifying the real thing

....................- Law
Shane Killian's Constitution Lectures

....................- Politics

....................- Pop Culture

....................- Psychology & Sociology
Psychology of Belief

Mathematics - Geometry
Khan Academy's Geometry Videos
Khan Academy's Trigonometry Videos

..................- Algebra
Khan Academy's Pre-Algebra Videos
Khan Academy's Linear Algebra Videos
Khan Academy's Algebra Videos

..................- Calculus
Khan Academy's Calculus Videos
Khan Academy's Differential Equations Videos

..................- Statistics
Khan Academy's Probability Videos

..................- Arithmetic
Khan Academy's Arithmetic Videos

Language - Rhetoric - Debate - Fallacies
Nizkor's List of Fallacies
Wikipedia's List of Fallacies
Taxonomy of logical fallacies
YourLogicalFallacy
Debunking Handbook

A Concise Introduction to Logic
.........................................- Examples

.........................................- Inductive Vs. Deductive

............................- Public Speaking (Dos and Don'ts)

..............- Foreign Language (Translators)
Google's Foreign Language Translator
Yahoo's Foreign Language Translator

..............- Grammar
Notorious Mix-Ups in Grammar

..............- Dictionaries, Thesaurui, and Other Word-Storage

..............- Quotes
DailyAtheistQuote
PositiveAtheism

Creativity - Arts - Music
-bands, how-to, etc-

.......................- Visual
Tails-155's deviantArt
-deviantArt, Worth1000, etc.

.......................- Literary
Storm by Tim Minchin
-book review sites, etc.
Ebon Musings
RichardDawkinsdotnet list of suggested reading

..............- Problem Solving (how to think outside the box, etc.)
CreatingMinds

Skepticism
Shane Killian's Bogosity
The James Randi Foundation YouTube Page
Richard Wiseman's YouTube Page
Penn and Teller's Bullshit!
Richard Wiseman's Homepage
Neurological Blog
SkepticalScience
C0nc0rdance's Blog
ProjectReason

Activism
Mikipedia's I Am An Atheist
Richard Dawkins: An Atheist's Call to Arms
IMRational's Why Do Atheists Care About Religion?
GoGreen's Why Atheists Care About YOUR Religion
20/20's The Price of Atheism
ZakieChan's Atheist
Celeb Atheists

TARGETS-Creationism
TalkOrigins Archive
NCSE's Website
AronRa's Foundational Falsehoods of Creationism
Thunderf00t's Why Do People Laugh At Creationists?, Shane Killian's Homage Video
cdk007's Evidence FOR Evolution and Against Creationism
cdk007's Why Young Earth Creationists Must DENY Gravity
potholer54's From Big Bang to Us -- Made Easy
DonExodus2's Transitional Fossils
DonExodus2's The Way of The Master- Lies and Ignorance Exposed
How Evolution Works - Including How Abiogenesis Works
cdk007's Evolution is a Blind Watchmaker
cdk007's How Wrong are Young Earth Creationists
Shane Killian's How Evolution is Scientific

............-Conspiracy Theories
9/11 Conspiracies Debunked

............-Religion-Related Senseless Practices (Abstinence Only, Circumcision, etc.)
Jezuzfreak777's Who Wants Atheist For Friends?(sic)

............-General Ignorance
What's The Harm?

Fun With The Above
The Crackpot Test
Hundreds and Hundreds of Proofs for God
Laws, Corollaries, and Vocabulary of Debate and Mail
Wall of Shame at WWGHA?

Philosophy- or Science-Comics and other fun stuff
Sci-ence - Comic
NerdyDayTrips - Locations you might want to visit
Symphonies of Science - Autotuned science-music
PHD-Comics
Saturday Morning Breakfast Cereal - Comic
XKCD - Comic
What if? - XKCD
CalamitiesOfNature - Comic (No longer active)

Miscellaneous - Better Education

............-Videos on YouTube
Shane Killian's Why Don't We Know More? A New Year's Resolution for Humanity
Shareski's Education Today and Tomorrow
JSTD4's Pay Attention
Canadian Cancer Society - A playlist on the research on cancer

............-Websites
Khanacademy - Mathematics
Hersperian - Free resources on health
Cochrane collaboration - A research group doing meta-analysis on health-care
AnimalDiversity - Free teaching/learning material
Learner - Free teaching/learning material
Coursera - Free University courses
List of Open-access science journals (Meaning they're free)
ScienceStore - Science explained with material (pictures are excellent)
Evoled - Teaching Evolution
Understanding Evolution - Berkley
Open Yale Courses - Free courses at Yale University

............-Tools
Unsourced - A PlugIn to help you find out where the research for an article came from

YouTube Check-it list - Website
Introducerat - Evolution - A continually updated website with videos about evolution

YouTube Check-it list - Leaders
AndromedasWake - CrAP Debunked, Welcome to the Universe and SiriusStargazing
AntiCitizenX
AronRa - Foundational Falsehoods of Creationism
beautyintheuniverse - Thunderf00t
cdk007
C0nc0rdance and C0nc0rdanceAnswers
DonExodus2 - How Evolution Works, How Abiogenesis Works
DPRJones - Creator of the MagicSandwichShow
DPRJonesLives
djarm67
ExtantDodo - LOTS of refutations
JaguarJ0nes - How to Pwn a YEC
JRChadwick
MagicSandwichShow
MikeFoz - ToBeFair
Minutephysics
National Center for Science Education (NCSE)
Potholer54 - Made Easy
Potholer54debunks Creationist Crap Debunked
QualiaSoup
TheraminTrees
Th1sWasATriumph
Thunderf00t - Why Do People Laugh at Creationists?
ZOMGitsCriss

............................. - Others
AKG41470
Albert10110
AmazingMeetingVideos - Official page for The Amazing Meeting
AnimalPlanetTV - Animal Planet's official channel
Answersinbooks
ASPCA - the official video channel for The American Society for the Prevention of Cruelty to Animals
AtheistBlindChick - self proclaimed aphilatelist
AtheistExperience and TheAtheistExperience - channels for The Atheist Experience, a local TV show in Austin, Texas
Best0fScience
BotAttack - one of the anti-censorship pages
Desertphile
DiscoveryEducation - Discovery Education's official channel
DiscoveryNetworks - another Discovery channel
DMCAAbuse - another anti-censorship page
DrixDZanth
EdwardCurrent
EvilZoe
ExpelledExposed
EvoBiologist
FactVsReligion
FFreethinker
FirstFreedomCampaign - the official page for the First Freedom Campaign
FranzDuckVideos
FreeScienceLectures
freedom0f5peech
FightingAtheist
GIIVideo - Creator of the website Why Won't God Heal Amputees?
GreatBigBore
GoGreen18 - LaciGreen
imrational
JamesRandiFoundation - The James Randi Foundation official channel
KeepFreeSpeechFree - My Secondary Account
klomckin - hosting many things on Bible errors
Largo64
LiberalViewer
Meolodysheep
Mickipedia
morsec0de - presently hosting Here Be Dragons
NationalGeographic National Geographic's official channel
NonStampCollector
OminousVoice
PatCondell
PennSays - Penn Jillette's official page for his Crackel series, Penn Says
Philhellenes
Pironiro
quirkology - Richard Wiseman's official channel
RabidApe
RationalResponse
ResearchChannel - The Research Channel's official...channel
SauceNMeatballs
SchrodingersFinch
ScienceChannel - the official Science Channel...channel
Shwanerd
SolRosenberg84
TEDTalksDirector - official channel for TED
Teirusu155 - My primary account
TheAmazingAtheist
thecarruths
TheDarwinFinches
TheGunpowderTreason
Theologikos
TheoreticalBullshit
TheWayOfGrowingPains
TreadTheeNot
XenuTV
XenuExposed
Yorrike

Books/DVDs/non-websites still would go with their respective section, not art->Literary etc

If you want something added, taken away or changed, please either PM me or post a comment below.

For an addition, include:
A format that's the same as mine
A link
A short description

For a deletion, include:
The link you want removed
A reason for the removal

For a change, include:
The link you want changed
A reason for the change


Note that I've not seen most of the YouTube channels on there, especially in the "Others" section, so I take no responsibility for their content.

I'll be noting changes here:
Thu Dec 20, 2012 12:12 -> Added to Videos on Youtube: Canadian Cancer Society added

Tue Jan 8, 2013 16:54 -> Added to Biology: Genome.gov added (Excellent Biological dictionary as far as I can tell)

Wed Apr 10, 2013 16:09 ->
Added to Biology: DevonianTimes, Tiktaalik, WTF Evolution?, EvolutionaryModel
Added the category OpenAcces and to it: PLoS, A bad list of journals
Added to General Science: SenseAboutScience
Added to Comics: What If? - XKCD
Added to Astronomy: NASA - Astronomy Picture of the Day
Added to Physics: Hyperphysics
Many of these found at: http://www.youtube.com/watch?v=i8t53Ak_yrQ

Stickied for great justice.

Also, hope you don't mind, but because I moved the original thread to the Mod cave the link no longer works I edited it.

australopithecus wrote:Also, hope you don't mind, but because I moved the original thread to the Mod cave the link no longer works I edited it.

OMG YOU DID WH... Oh, ok.

I recommend Nizkor, "The Central Database of Shoah Victims' Names" at Yad Vashem and the holocaustcontroversies blog for dealing with Holocaust deniers.

Also didn't i mention something about Time team in the old version of this thread?

I updated the list two months ago and I'll post another update soon, but for now I just want to post a few links/tools I have not yet used, to I'll take this post to do it:
Zotero
Evernote
Scrivener
Getpocket
RepliGo

How to read a paper (behind BMJ pay wall)
How to read a paper (free BMJ resources)
How to read a paper (Keshav, 2012)

Skeptic - How to be skeptical about the media (lots of interesting links)

Another update, I will organize the OP in a week, that's when I get off Uni.

Commonsenseatheism's short resource list
RDF's huge collection of evolution resources
Calilasseia's excellent "Assorted Facts and Fallacies"
RDF's "Science News Resources"
TalkRational's Abiogenesis resources
... and similar to the above
MIT Open Courses
101 websites for science teachers

Having promised to update the list in JUNE, I now vow to update it during the winter holidays. Women YouTube Science Channels, source.

Science (biology):
Claire, Brilliant Botany: https://www.youtube.com/user/BrilliantBotany
Sally Le Page, Shed Science: https://www.youtube.com/user/shedscience
Julia Wilde, That's So Science: https://www.youtube.com/user/wildescience/videos
Dr. Bondar: http://www.youtube.com/user/DrBondar
Lindsay Doe, Sexplanations http://www.youtube.com/sexplanations
Laci Green, Sex+: http://www.youtube.com/lacigreen
Annie Gaus, Pick your Poison: https://www.youtube.com/user/pickyourpoisonshow
Vanessa Hill, BrainCraft: https://www.youtube.com/braincraftvideo
The Penguin Prof: http://www.youtube.com/user/ThePenguinProf
Amoeba Sisters: https://www.youtube.com/user/AmoebaSisters

Science (misc.):
Maddie Moate, Earth Unplugged: http://www.youtube.com/earthunplugged
Elise Andrew, I F*cking Love Science : https://www.youtube.com/user/IFLScience
Rebecca Watson: http://www.youtube.com/user/rkwatson/videos
Alex Dainis, Bite Sci-zed: https://www.youtube.com/user/Lexie527/
Amy Shira Teitel: http://bit.ly/1dAXh9T
Joanne Manaster: https://www.youtube.com/user/joannelovesscience/
Jessica King, FieldNotes: http://www.youtube.com/jessicasfieldnotes
Meg Rosenburg, Tales from the History of Science: http://bit.ly/18rbhRF
Ella, Sci-Files: https://www.youtube.com/user/EllaC522/
Dr. Kiki, This Week in Science: https://www.youtube.com/user/ThisWeekinScience
Boonsri, Elemental: http://www.youtube.com/user/ElementalDIY/
Eff Yeah Fluid Dynamics: http://www.youtube.com/user/fyfluiddynamics
Allison Jack, Agricultural Science: http://www.youtube.com/user/AllisonLHJack/
Katie McGill, The Physics Factor: https://www.youtube.com/thephysicsfactor

Technology:
Amanda Aizuss, iTalkApple: https://www.youtube.com/user/iTalkApple/
Emily Eifler, BlinkPopShift: https://www.youtube.com/user/BlinkPopShift/
Fran Blanche: https://www.youtube.com/ContourCorsets

Engineering:
Jerri Ellsworth: https://www.youtube.com/user/jeriellsworth
Limor "Ladyada" Fried: https://www.youtube.com/user/adafruit/

Math:
ViHart: http://www.youtube.com/vihart
Saramoira Shields, Mathematigal: https://www.youtube.com/user/SqueakyMcBald/
LookingGlassUniverse: https://www.youtube.com/user/LookingGlassUniverse/
Rebecca Thomas, Dead Bunny Guides: https://www.youtube.com/deadbunnyguides/

Biology:
Bozeman Science

All the channels linked in this channel. Those channels cover just about everything.

Just a suggestion for anyone who posts here. Don't use red on this background. Those of us who are color challenged can't see it very well. I have to highlight any red text so I can read it. I'm sure there are others out there who suffer from color blindness roaming around the forums. I wouldn't bother going back and changing anything but it's something to consider for future posts.

I found a large number of college courses on youtube from yale. Considering the number of people who come here looking for religious info you might link to their courses on the Bible. There's one for the new and old testaments.

https://www.youtube.com/playlist?list=P ... No4yD1Q5s9
https://www.youtube.com/playlist?list=P ... F77FA5FFF8

And one on Death that is interesting.

https://www.youtube.com/playlist?list=P ... F1AD9047B0

Thanks for the input. I may (or may not) change the colours when I get the time and actually update the damn thing, but I'm stuck in work limbo at the moment.